HL_6LQS_014

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6LQS|1|SA|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_014 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1975

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6LQS|1|SA|U|450
6LQS|1|SA|A|451
6LQS|1|SA|A|452
6LQS|1|SA|U|453
6LQS|1|SA|U|454
6LQS|1|SA|C|455
6LQS|1|SA|A|456

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A