HL_6LQS_015
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUUCG
- Length
- 6 nucleotides
- Bulged bases
- 6LQS|1|SA|U|493, 6LQS|1|SA|U|494, 6LQS|1|SA|C|495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQS_015 not in the Motif Atlas
- Geometric match to HL_2Y8W_001
- Geometric discrepancy: 0.1076
- The information below is about HL_2Y8W_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.2
- Basepair signature
- cWW
- Number of instances in this motif group
- 3
Unit IDs
6LQS|1|SA|C|491
6LQS|1|SA|A|492
6LQS|1|SA|U|493
6LQS|1|SA|U|494
6LQS|1|SA|C|495
6LQS|1|SA|G|496
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain 5J
- rRNA-processing protein FCF2
- Chain 5K
- rRNA-processing protein FCF1
- Chain RJ
- Ribosome biogenesis protein BMS1
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