HL_6LQS_018

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGG

Length

4 nucleotides

Bulged bases

6LQS|1|SA|C|659

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_018 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3594

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.3

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6LQS|1|SA|C|658
6LQS|1|SA|C|659
6LQS|1|SA|G|676
6LQS|1|SA|G|677

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20