HL_6LQS_021
3D structure
- PDB id
- 6LQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQS_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.4406
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6LQS|1|SA|A|900
6LQS|1|SA|G|901
6LQS|1|SA|G|902
6LQS|1|SA|U|903
6LQS|1|SA|G|904
6LQS|1|SA|A|905
6LQS|1|SA|A|906
6LQS|1|SA|A|907
6LQS|1|SA|U|908
6LQS|1|SA|U|909
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain B3
- U3 small nucleolar RNA-associated protein 13
- Chain SC
- 40S ribosomal protein S1-A
- Chain SP
- 40S ribosomal protein S14-A
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