HL_6LQS_026

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCAUUGAUGC

Length

12 nucleotides

Bulged bases

6LQS|1|SA|A|1436

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_026 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1035

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6LQS|1|SA|G|1271
6LQS|1|SA|U|1272
6LQS|1|SA|G|1273
6LQS|1|SA|C|1274
6LQS|1|SA|A|1275
6LQS|1|SA|U|1276
6LQS|1|SA|U|1434
6LQS|1|SA|G|1435
6LQS|1|SA|A|1436
6LQS|1|SA|U|1437
6LQS|1|SA|G|1438
6LQS|1|SA|C|1439

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RS

Essential nuclear protein 1