HL_6LQS_034

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAACC

Length

7 nucleotides

Bulged bases

6LQS|1|SA|A|1781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_034 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3345

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6LQS|1|SA|G|1778
6LQS|1|SA|U|1779
6LQS|1|SA|G|1780
6LQS|1|SA|A|1781
6LQS|1|SA|A|1782
6LQS|1|SA|C|1783
6LQS|1|SA|C|1784

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain B1

Periodic tryptophan protein 2

Chain RT

Pno1