HL_6LQT_029
3D structure
- PDB id
- 6LQT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUACACAC
- Length
- 8 nucleotides
- Bulged bases
- 6LQT|1|SA|C|1632
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQT_029 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2274
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6LQT|1|SA|G|1629
6LQT|1|SA|U|1630
6LQT|1|SA|A|1631
6LQT|1|SA|C|1632
6LQT|1|SA|A|1633
6LQT|1|SA|C|1634
6LQT|1|SA|A|1635
6LQT|1|SA|C|1636
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain B1
- Periodic tryptophan protein 2
- Chain B2
- U3 small nucleolar RNA-associated protein 12
- Chain B3
- U3 small nucleolar RNA-associated protein 13
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