HL_6LQU_011

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQU_011 not in the Motif Atlas

Geometric match to HL_7RQB_022

Geometric discrepancy: 0.2118

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6LQU|1|5A|U|514
6LQU|1|5A|G|515
6LQU|1|5A|U|516
6LQU|1|5A|A|517
6LQU|1|5A|A|518
6LQU|1|5A|A|519
6LQU|1|5A|A|520
6LQU|1|5A|G|521

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5I

Protein SOF1

Chain RP

U3 small nucleolar RNA-associated protein 20