3D structure

PDB id
6LQU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
6LQU|1|SA|A|400, 6LQU|1|SA|C|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6LQU_019 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.5589
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6LQU|1|SA|C|393
6LQU|1|SA|C|394
6LQU|1|SA|U|395
6LQU|1|SA|G|396
6LQU|1|SA|A|397
6LQU|1|SA|G|398
6LQU|1|SA|A|399
6LQU|1|SA|A|400
6LQU|1|SA|A|401
6LQU|1|SA|C|402
6LQU|1|SA|G|403
6LQU|1|SA|G|404

Current chains

Chain SA
18S pre-rRNA

Nearby chains

Chain RA
Ribosome biogenesis protein ENP2
Chain SH
40S ribosomal protein S6-A
Chain SJ
40S ribosomal protein S8-A

Coloring options:


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