HL_6LQU_026

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6LQU|1|SA|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQU_026 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.4863

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6LQU|1|SA|G|997
6LQU|1|SA|A|998
6LQU|1|SA|U|999
6LQU|1|SA|C|1000
6LQU|1|SA|A|1001
6LQU|1|SA|G|1002
6LQU|1|SA|A|1003
6LQU|1|SA|U|1004
6LQU|1|SA|A|1005
6LQU|1|SA|C|1006
6LQU|1|SA|C|1007

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RD

rRNA biogenesis protein RRP5

Chain RE

U3 small nucleolar RNA-associated protein 22