HL_6LQV_021

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUGCAUUGAUGC

Length

12 nucleotides

Bulged bases

6LQV|1|SA|A|1436

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQV_021 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1931

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6LQV|1|SA|G|1271
6LQV|1|SA|U|1272
6LQV|1|SA|G|1273
6LQV|1|SA|C|1274
6LQV|1|SA|A|1275
6LQV|1|SA|U|1276
6LQV|1|SA|U|1434
6LQV|1|SA|G|1435
6LQV|1|SA|A|1436
6LQV|1|SA|U|1437
6LQV|1|SA|G|1438
6LQV|1|SA|C|1439

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RS

Essential nuclear protein 1