HL_6LSR_001

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

6LSR|1|2|A|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_001 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.0947

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6LSR|1|2|U|37
6LSR|1|2|A|38
6LSR|1|2|A|39
6LSR|1|2|G|40
6LSR|1|2|C|41
6LSR|1|2|A|42
6LSR|1|2|U|43
6LSR|1|2|A|44

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15

Chain W

60S ribosomal protein L36a