HL_6LSR_004

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6LSR|1|2|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_004 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1954

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6LSR|1|2|C|131
6LSR|1|2|G|132
6LSR|1|2|C|133
6LSR|1|2|G|134
6LSR|1|2|G|135
6LSR|1|2|C|136
6LSR|1|2|G|137

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15