HL_6LSR_011

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_011 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.339

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6LSR|1|2|U|392
6LSR|1|2|U|393
6LSR|1|2|G|394
6LSR|1|2|A|395
6LSR|1|2|A|396
6LSR|1|2|G|397
6LSR|1|2|A2M|398
6LSR|1|2|G|399

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain Y

60S ribosomal protein L17