HL_6LSR_016

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

6LSR|1|2|A|1254, 6LSR|1|2|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_016 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1332

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6LSR|1|2|C|1250
6LSR|1|2|C|1251
6LSR|1|2|C|1252
6LSR|1|2|G|1253
6LSR|1|2|A|1254
6LSR|1|2|A|1255
6LSR|1|2|G|1256
6LSR|1|2|A|1257
6LSR|1|2|G|1258
6LSR|1|2|G|1259
6LSR|1|2|G|1260

Current chains

Chain 2

28S rRNA

Nearby chains