HL_6LSR_049

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

6LSR|1|2|G|3615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_049 not in the Motif Atlas

Homologous match to HL_5TBW_045

Geometric discrepancy: 0.2408

The information below is about HL_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6LSR|1|2|G|3614
6LSR|1|2|G|3615
6LSR|1|2|U|3616
6LSR|1|2|G|3617
6LSR|1|2|C|3618

Current chains

Chain 2

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L19

Chain f

60S ribosomal protein L24