HL_6LSR_056

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

6LSR|1|2|G|4141, 6LSR|1|2|C|4142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_056 not in the Motif Atlas

Homologous match to HL_8C3A_054

Geometric discrepancy: 0.4141

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6LSR|1|2|C|4138
6LSR|1|2|G|4139
6LSR|1|2|C|4140
6LSR|1|2|G|4141
6LSR|1|2|C|4142
6LSR|1|2|G|4143
6LSR|1|2|C|4144
6LSR|1|2|C|4145
6LSR|1|2|G|4146

Current chains

Chain 2

28S rRNA

Nearby chains