HL_6LSR_087
3D structure
- PDB id
- 6LSR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- AAGCAGAAUU
- Length
- 10 nucleotides
- Bulged bases
- 6LSR|1|2|G|4475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LSR_087 not in the Motif Atlas
- Homologous match to HL_9AXU_058
- Geometric discrepancy: 0.2788
- The information below is about HL_9AXU_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34245.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6LSR|1|2|A|4473
6LSR|1|2|A|4474
6LSR|1|2|G|4475
6LSR|1|2|C|4476
6LSR|1|2|A|4477
6LSR|1|2|G|4478
6LSR|1|2|A|4479
6LSR|1|2|A|4480
6LSR|1|2|U|4481
6LSR|1|2|U|4482
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L9
Coloring options: