HL_6LSS_057

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6LSS|1|2|A|4214, 6LSS|1|2|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1586

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6LSS|1|2|U|4210
6LSS|1|2|C|4211
6LSS|1|2|A|4212
6LSS|1|2|A|4213
6LSS|1|2|A|4214
6LSS|1|2|C|4215
6LSS|1|2|G|4216
6LSS|1|2|G|4217
6LSS|1|2|U|4218
6LSS|1|2|A|4219
6LSS|1|2|6MZ|4220
6LSS|1|2|C|4221
6LSS|1|2|G|4222

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain R

Translation machinery-associated protein 16

Chain c

60S ribosomal protein L21