HL_6LSS_063

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6LSS|1|2|U|4419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSS_063 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.3284

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6LSS|1|2|C|4417
6LSS|1|2|G|4418
6LSS|1|2|U|4419
6LSS|1|2|U|4420
6LSS|1|2|C|4421
6LSS|1|2|A|4422
6LSS|1|2|U|4423
6LSS|1|2|A|4424
6LSS|1|2|G|4425

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16