HL_6LVR_001

3D structure

PDB id

6LVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CAG(H2U)(H2U)GGGAG

Length

10 nucleotides

Bulged bases

6LVR|1|B|G|18, 6LVR|1|B|G|19, 6LVR|1|B|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LVR_001 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.1569

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6LVR|1|B|C|13
6LVR|1|B|A|14
6LVR|1|B|G|15
6LVR|1|B|H2U|16
6LVR|1|B|H2U|17
6LVR|1|B|G|18
6LVR|1|B|G|19
6LVR|1|B|G|20
6LVR|1|B|A|21
6LVR|1|B|G|22

Current chains

Chain B

yeast phenylalanine tRNA

Nearby chains

Chain A

Proteinaceous RNase P 1, chloroplastic/mitochondrial

Chain C

Proteinaceous RNase P 1, chloroplastic/mitochondrial