HL_6M62_027

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6M62|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2938

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6M62|1|1|C|1239
6M62|1|1|A|1240
6M62|1|1|U|1241
6M62|1|1|G|1242
6M62|1|1|G|1243
6M62|1|1|A|1244
6M62|1|1|A|1245
6M62|1|1|G|1246
6M62|1|1|U|1247
6M62|1|1|C|1248
6M62|1|1|G|1249

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2

Chain x

Ribosome assembly protein 4