HL_6M62_059

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6M62|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_059 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1941

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6M62|1|1|A|2897
6M62|1|1|G|2898
6M62|1|1|C|2899
6M62|1|1|A|2900
6M62|1|1|G|2901
6M62|1|1|A|2902
6M62|1|1|A|2903
6M62|1|1|U|2904

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2