HL_6M62_060

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

6M62|1|1|G|2922, 6M62|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_060 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1396

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6M62|1|1|U|2920
6M62|1|1|U|2921
6M62|1|1|G|2922
6M62|1|1|U|2923
6M62|1|1|U|2924
6M62|1|1|C|2925
6M62|1|1|A|2926

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2