HL_6M62_072
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6M62_072 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.3955
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6M62|1|3|U|32
6M62|1|3|U|33
6M62|1|3|C|34
6M62|1|3|C|35
6M62|1|3|C|36
6M62|1|3|G|37
6M62|1|3|U|38
6M62|1|3|C|39
6M62|1|3|C|40
6M62|1|3|G|41
6M62|1|3|A|42
6M62|1|3|U|43
6M62|1|3|C|44
6M62|1|3|A|45
Current chains
- Chain 3
- RDN5-2 rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- rRNA-processing protein CGR1
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
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