HL_6M62_075

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_075 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2153

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6M62|1|6|C|37
6M62|1|6|U|38
6M62|1|6|U|39
6M62|1|6|U|40
6M62|1|6|G|41
6M62|1|6|G|42

Current chains

Chain 6

ITS2-1 miscRNA

Nearby chains

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15