HL_6MTB_029

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6MTB|1|5|U|1596, 6MTB|1|5|A|1600, 6MTB|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_029 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0817

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6MTB|1|5|A|1593
6MTB|1|5|C|1594
6MTB|1|5|G|1595
6MTB|1|5|U|1596
6MTB|1|5|G|1597
6MTB|1|5|C|1598
6MTB|1|5|G|1599
6MTB|1|5|A|1600
6MTB|1|5|A|1601
6MTB|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain j

60S ribosomal protein L37