HL_6MTB_056

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6MTB|1|5|A|3642, 6MTB|1|5|A|3643, 6MTB|1|5|U|3644, 6MTB|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTB_056 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1609

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6MTB|1|5|U|3639
6MTB|1|5|U|3640
6MTB|1|5|U|3641
6MTB|1|5|A|3642
6MTB|1|5|A|3643
6MTB|1|5|U|3644
6MTB|1|5|U|3645
6MTB|1|5|A|3646
6MTB|1|5|A|3647
6MTB|1|5|A|3648
6MTB|1|5|A|3649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain j

60S ribosomal protein L37