HL_6MTC_026

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6MTC|1|5|U|1596, 6MTC|1|5|A|1600, 6MTC|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_026 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0731

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6MTC|1|5|A|1593
6MTC|1|5|C|1594
6MTC|1|5|G|1595
6MTC|1|5|U|1596
6MTC|1|5|G|1597
6MTC|1|5|C|1598
6MTC|1|5|G|1599
6MTC|1|5|A|1600
6MTC|1|5|A|1601
6MTC|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain j

60S ribosomal protein L37