HL_6MTC_027

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6MTC|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_027 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1527

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTC|1|5|G|1627
6MTC|1|5|C|1628
6MTC|1|5|G|1629
6MTC|1|5|A|1630
6MTC|1|5|A|1631
6MTC|1|5|A|1632
6MTC|1|5|G|1633
6MTC|1|5|A|1634
6MTC|1|5|C|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain N

60S Ribosomal protein L15

Chain j

60S ribosomal protein L37