HL_6MTC_030

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6MTC|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_030 not in the Motif Atlas

Geometric match to HL_5J7L_024

Geometric discrepancy: 0.3928

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6MTC|1|5|C|1816
6MTC|1|5|U|1817
6MTC|1|5|G|1818
6MTC|1|5|G|1819
6MTC|1|5|U|1820
6MTC|1|5|G|1821
6MTC|1|5|U|1822
6MTC|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29