HL_6MTC_088

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6MTC|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_088 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.2134

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6MTC|1|9|G|288
6MTC|1|9|G|289
6MTC|1|9|U|290
6MTC|1|9|G|291
6MTC|1|9|A|292
6MTC|1|9|C|293
6MTC|1|9|U|294
6MTC|1|9|C|295

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain GG

40S ribosomal protein S6

Chain LL

40S ribosomal protein S11