HL_6MTC_100

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6MTC|1|9|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_100 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5523

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTC|1|9|U|885
6MTC|1|9|A|886
6MTC|1|9|U|887
6MTC|1|9|U|888
6MTC|1|9|U|889
6MTC|1|9|U|890
6MTC|1|9|G|891
6MTC|1|9|U|892
6MTC|1|9|U|893
6MTC|1|9|G|894
6MTC|1|9|G|895
6MTC|1|9|U|896
6MTC|1|9|U|897
6MTC|1|9|U|898
6MTC|1|9|U|899
6MTC|1|9|C|900
6MTC|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6