3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AUUGAUAGCU
Length
10 nucleotides
Bulged bases
6MTC|1|9|U|1300, 6MTC|1|9|G|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTC_108 not in the Motif Atlas
Homologous match to HL_4V88_213
Geometric discrepancy: 0.3812
The information below is about HL_4V88_213
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

6MTC|1|9|A|1295
6MTC|1|9|U|1296
6MTC|1|9|U|1297
6MTC|1|9|G|1298
6MTC|1|9|A|1299
6MTC|1|9|U|1300
6MTC|1|9|A|1301
6MTC|1|9|G|1302
6MTC|1|9|C|1303
6MTC|1|9|U|1304

Current chains

Chain 9
18S rRNA

Nearby chains

Chain PP
40S ribosomal protein S15
Chain dd
40S ribosomal protein S29
Chain ff
40S ribosomal protein S27a

Coloring options:


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