HL_6MTD_022

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6MTD|1|5|U|1596, 6MTD|1|5|A|1600, 6MTD|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_022 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0829

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|A|1593
6MTD|1|5|C|1594
6MTD|1|5|G|1595
6MTD|1|5|U|1596
6MTD|1|5|G|1597
6MTD|1|5|C|1598
6MTD|1|5|G|1599
6MTD|1|5|A|1600
6MTD|1|5|A|1601
6MTD|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37