HL_6MTD_023

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6MTD|1|5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_023 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1373

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|G|1627
6MTD|1|5|C|1628
6MTD|1|5|G|1629
6MTD|1|5|A|1630
6MTD|1|5|A|1631
6MTD|1|5|A|1632
6MTD|1|5|G|1633
6MTD|1|5|A|1634
6MTD|1|5|C|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain j

eL37