HL_6MTD_026

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6MTD|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_026 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3938

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6MTD|1|5|C|1816
6MTD|1|5|U|1817
6MTD|1|5|G|1818
6MTD|1|5|G|1819
6MTD|1|5|U|1820
6MTD|1|5|G|1821
6MTD|1|5|U|1822
6MTD|1|5|G|1823

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain b

eL29