HL_6MTD_030

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_030 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2112

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6MTD|1|5|U|2006
6MTD|1|5|G|2007
6MTD|1|5|U|2008
6MTD|1|5|A|2009
6MTD|1|5|A|2010
6MTD|1|5|C|2011
6MTD|1|5|A|2012
6MTD|1|5|A|2013

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40

Chain s

uL10

Chain v

eEF2