HL_6MTD_044
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 6MTD|1|5|C|2794, 6MTD|1|5|G|2796, 6MTD|1|5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTD_044 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0783
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6MTD|1|5|C|2792
6MTD|1|5|G|2793
6MTD|1|5|C|2794
6MTD|1|5|A|2795
6MTD|1|5|G|2796
6MTD|1|5|C|2797
6MTD|1|5|A|2798
6MTD|1|5|G|2799
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain j
- eL37
- Chain l
- eL39
Coloring options: