3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUAAC(B8H)A(PSU)GAC
Length
11 nucleotides
Bulged bases
6MTD|1|5|A|3760, 6MTD|1|5|C|3761, 6MTD|1|5|A|3763
QA status
Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTD_052 not in the Motif Atlas
Homologous match to HL_8C3A_049
Geometric discrepancy: 0.3468
The information below is about HL_8C3A_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6MTD|1|5|G|3757
6MTD|1|5|U|3758
6MTD|1|5|A|3759
6MTD|1|5|A|3760
6MTD|1|5|C|3761
6MTD|1|5|B8H|3762
6MTD|1|5|A|3763
6MTD|1|5|PSU|3764
6MTD|1|5|G|3765
6MTD|1|5|A|3766
6MTD|1|5|C|3767

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain v
eEF2

Coloring options:


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