HL_6MTD_052

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

6MTD|1|5|A|3760, 6MTD|1|5|C|3761, 6MTD|1|5|A|3763

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_052 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.3468

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6MTD|1|5|G|3757
6MTD|1|5|U|3758
6MTD|1|5|A|3759
6MTD|1|5|A|3760
6MTD|1|5|C|3761
6MTD|1|5|B8H|3762
6MTD|1|5|A|3763
6MTD|1|5|PSU|3764
6MTD|1|5|G|3765
6MTD|1|5|A|3766
6MTD|1|5|C|3767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain v

eEF2