HL_6MTD_058

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6MTD|1|5|A|4214, 6MTD|1|5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.131

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6MTD|1|5|U|4210
6MTD|1|5|C|4211
6MTD|1|5|A|4212
6MTD|1|5|A|4213
6MTD|1|5|A|4214
6MTD|1|5|C|4215
6MTD|1|5|G|4216
6MTD|1|5|G|4217
6MTD|1|5|U|4218
6MTD|1|5|A|4219
6MTD|1|5|6MZ|4220
6MTD|1|5|C|4221
6MTD|1|5|G|4222

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain T

eL21

Chain b

eL29