HL_6MTD_065

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6MTD|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_065 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1064

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6MTD|1|5|A|4474
6MTD|1|5|G|4475
6MTD|1|5|C|4476
6MTD|1|5|A|4477
6MTD|1|5|G|4478
6MTD|1|5|A|4479
6MTD|1|5|A|4480
6MTD|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain v

eEF2