HL_6MTD_097

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6MTD|1|9|U|889, 6MTD|1|9|U|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_097 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5469

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTD|1|9|U|885
6MTD|1|9|A|886
6MTD|1|9|U|887
6MTD|1|9|U|888
6MTD|1|9|U|889
6MTD|1|9|U|890
6MTD|1|9|G|891
6MTD|1|9|U|892
6MTD|1|9|U|893
6MTD|1|9|G|894
6MTD|1|9|G|895
6MTD|1|9|U|896
6MTD|1|9|U|897
6MTD|1|9|U|898
6MTD|1|9|U|899
6MTD|1|9|C|900
6MTD|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain LL

uS17