HL_6MTD_105

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6MTD|1|9|U|1300, 6MTD|1|9|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3119

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6MTD|1|9|A|1295
6MTD|1|9|U|1296
6MTD|1|9|U|1297
6MTD|1|9|G|1298
6MTD|1|9|A|1299
6MTD|1|9|U|1300
6MTD|1|9|A|1301
6MTD|1|9|G|1302
6MTD|1|9|C|1303
6MTD|1|9|U|1304

Current chains

Chain 9

18S rRNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31