HL_6MTE_018
3D structure
- PDB id
- 6MTE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTE_018 not in the Motif Atlas
- Geometric match to HL_1ZCI_002
- Geometric discrepancy: 0.3943
- The information below is about HL_1ZCI_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6MTE|1|5|C|1436
6MTE|1|5|C|1437
6MTE|1|5|U|1438
6MTE|1|5|U|1440
6MTE|1|5|C|1441
6MTE|1|5|C|1442
6MTE|1|5|A|1443
6MTE|1|5|G|1444
6MTE|1|5|U|1445
6MTE|1|5|C|1446
6MTE|1|5|C|1447
6MTE|1|5|G|1448
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain F
- uL30
- Chain Q
- eL18
- Chain b
- eL29
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