HL_6MTE_021

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

6MTE|1|5|U|1596, 6MTE|1|5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_021 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0892

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|A|1593
6MTE|1|5|C|1594
6MTE|1|5|G|1595
6MTE|1|5|U|1596
6MTE|1|5|G|1597
6MTE|1|5|C|1598
6MTE|1|5|G|1599
6MTE|1|5|A|1600
6MTE|1|5|A|1601
6MTE|1|5|U|1602

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37