HL_6MTE_029

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_029 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2426

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6MTE|1|5|U|2006
6MTE|1|5|G|2007
6MTE|1|5|U|2008
6MTE|1|5|A|2009
6MTE|1|5|A|2010
6MTE|1|5|C|2011
6MTE|1|5|A|2012
6MTE|1|5|A|2013

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40

Chain s

uL10

Chain v

eEF2