HL_6MTE_048

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6MTE|1|5|A|3642, 6MTE|1|5|A|3643, 6MTE|1|5|U|3644, 6MTE|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_048 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.2027

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6MTE|1|5|U|3639
6MTE|1|5|U|3640
6MTE|1|5|U|3641
6MTE|1|5|A|3642
6MTE|1|5|A|3643
6MTE|1|5|U|3644
6MTE|1|5|U|3645
6MTE|1|5|A|3646
6MTE|1|5|A|3647
6MTE|1|5|A|3648
6MTE|1|5|A|3649

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain j

eL37