HL_6MTE_078

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6MTE|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_078 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.3865

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6MTE|1|8|G|121
6MTE|1|8|G|122
6MTE|1|8|U|123
6MTE|1|8|U|124
6MTE|1|8|C|125
6MTE|1|8|C|126
6MTE|1|8|U|127
6MTE|1|8|C|128
6MTE|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

uL23