HL_6MTE_095

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_095 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5633

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTE|1|9|U|885
6MTE|1|9|A|886
6MTE|1|9|U|887
6MTE|1|9|U|888
6MTE|1|9|U|889
6MTE|1|9|U|890
6MTE|1|9|G|891
6MTE|1|9|U|892
6MTE|1|9|U|893
6MTE|1|9|G|894
6MTE|1|9|G|895
6MTE|1|9|U|896
6MTE|1|9|U|897
6MTE|1|9|U|898
6MTE|1|9|U|899
6MTE|1|9|C|900
6MTE|1|9|G|901

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6